STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cntn1Contactin 1b. (1040 aa)    
Predicted Functional Partners:
LOC103467671
Uncharacterized protein.
    
0.956
LOC103459454
Neuronal cell adhesion molecule a.
    
0.950
CNTN1
Contactin 1.
  
  
 
0.902
cntnap1
Contactin associated protein 1.
   
 0.884
ptprg
Carbonic anhydrase XVI b.
    
 0.614
nfasc
Neurofascin homolog (chicken) a.
    
0.583
LOC103465615
Cell adhesion molecule L1-like b.
    
0.524
LOC103468055
Uncharacterized protein.
    
0.524
NRCAM
Uncharacterized protein.
    
0.524
LOC103467235
Uncharacterized protein.
    
0.524
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.