STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tbc1d19TBC1 domain family, member 19. (549 aa)    
Predicted Functional Partners:
ttll1
Tubulin tyrosine ligase-like family, member 1.
   
 
 0.728
nicn1
Nicolin 1.
    
   0.642
LRRC49
Leucine rich repeat containing 49.
   
   0.566
TBC1D13
TBC1 domain family member 13.
      
 0.549
LOC103463399
TBC1 domain family, member 7.
      
 0.534
ttl
Tubulin tyrosine ligase.
   
 
 0.504
CCKAR
Cholecystokinin A receptor; Belongs to the G-protein coupled receptor 1 family.
      
 0.501
wdfy3
WD repeat and FYVE domain containing 3.
      
 0.473
haus3
HAUS augmin-like complex, subunit 3.
      
 0.445
ttll10
Tubulin tyrosine ligase-like family, member 10.
   
 
 0.443
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.