STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rogdiRogdi atypical leucine zipper. (290 aa)    
Predicted Functional Partners:
dmxl2
Dmx-like 2.
    
 
 0.912
DMXL1
Dmx like 1.
    
 
 0.912
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 
 0.816
atp6v1e1
ATPase H+ transporting V1 subunit E1a.
    
 
 0.680
LOC103459166
ATPase H+ transporting V1 subunit E1b.
    
 
 0.680
ATP6V1B2
ATPase H+ transporting V1 subunit B2.
   
 
 0.665
LOC103476533
Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.
   
 
 0.665
glyr1
Glyoxylate reductase 1 homolog (Arabidopsis).
 
      0.643
atp6v1h
V-type proton ATPase subunit H; Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit H activates ATPase activity of the enzyme and couples ATPase activity to proton flow. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system.
    
 
 0.581
smyd4
SET and MYND domain containing 4.
      
 0.561
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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