STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103476755Zinc finger, RAN-binding domain containing 1b. (771 aa)    
Predicted Functional Partners:
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.835
rps27a
Ribosomal protein S27a.
   
 0.823
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.791
ubxn7
UBX domain protein 7.
   
 
 0.777
ubb
Uncharacterized protein.
   
 0.683
LOC103473189
Uncharacterized protein.
   
 0.683
tnip1
TNFAIP3 interacting protein 1.
   
 0.663
ENSPREP00000009964
Ubiquitin-like domain-containing protein.
   
 0.640
apc2
APC regulator of WNT signaling pathway 2.
    
  0.630
apc
APC regulator of WNT signaling pathway.
    
  0.630
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.