STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slirpSRA stem-loop interacting RNA binding protein. (100 aa)    
Predicted Functional Partners:
lrpprc
Leucine-rich pentatricopeptide repeat containing.
   
 
 0.930
Ndufb4
NADH:ubiquinone oxidoreductase subunit B4.
   
    0.731
TOMM7
Translocase of outer mitochondrial membrane 7.
   
  
 0.727
snrpg
Small nuclear ribonucleoprotein G.
   
 0.727
tox2
TOX high mobility group box family member 2.
   
 0.703
pus3
Pseudouridylate synthase 3.
   
 
 0.682
pus1
Pseudouridine synthase 1.
   
  
 0.682
ndufc1
Uncharacterized protein.
   
    0.679
Snrpf
Small nuclear ribonucleoprotein polypeptide F.
   
 0.656
LOC103470725
G-rich RNA sequence binding factor 1.
   
 0.638
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.