STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zcchc2Zinc finger, CCHC domain containing 2. (1061 aa)    
Predicted Functional Partners:
mtrex
Mtr4 exosome RNA helicase.
   
 
 0.598
relch
RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing.
    
 
 0.580
ENSPREP00000003902
Si:ch211-214e3.5.
    
 
 0.481
DNAJC13
DnaJ heat shock protein family (Hsp40) member C13.
   
  
 0.473
tent4b
Terminal nucleotidyltransferase 4B.
   
 
 0.440
TENT4A
Terminal nucleotidyltransferase 4A.
   
 
 0.440
LOC103472069
Terminal nucleotidyltransferase 4A.
   
 
 0.440
LOC103471796
Uncharacterized protein.
      
 0.426
nkapd1
Zgc:162339.
      
 0.414
LOC103471057
Bromodomain containing 8.
  
 
   0.408
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.