STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103460202Si:dkey-69o16.5. (256 aa)    
Predicted Functional Partners:
rpia
Ribose 5-phosphate isomerase A (ribose 5-phosphate epimerase).
     
 0.647
zc3h15
Zinc finger CCCH-type containing 15.
      
 0.553
WDR33
WD repeat domain 33.
      
 0.550
LOC103467358
IKAROS family zinc finger 4.
      
 0.550
dusp28
Dual specificity phosphatase 28.
      
 0.549
IKZF4
IKAROS family zinc finger 4.
      
 0.531
LOC103460587
Uncharacterized protein.
      
 0.526
lmbr1l
Limb development membrane protein 1-like; Belongs to the LIMR family.
      
 0.524
clpp
ATP-dependent Clp protease proteolytic subunit.
     
 0.477
mettl22
Methyltransferase like 22.
      
 0.477
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.