STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSDE1Cold shock domain containing E1, RNA-binding. (912 aa)    
Predicted Functional Partners:
rasa1
RAS p21 protein activator (GTPase activating protein) 1a.
   
 0.791
ENSPREP00000015831
Uncharacterized protein.
    
 0.788
ENSPREP00000015870
Uncharacterized protein.
    
 0.788
ENSPREP00000015917
EH domain-containing protein.
    
 0.788
itsn2
Intersectin 2a.
    
 0.788
nf1
Neurofibromin 1b.
   
 0.787
raf1
Raf-1 proto-oncogene, serine/threonine kinase a.
   
 0.746
braf
B-Raf proto-oncogene, serine/threonine kinase.
   
 0.746
LOC103469576
A-Raf proto-oncogene, serine/threonine kinase.
   
 0.746
pde6d
60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.
    
 0.714
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.