STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
setd3Protein-histidine N-methyltransferase. (588 aa)    
Predicted Functional Partners:
bccip
Protein BCCIP homolog; Belongs to the BCP1 family.
   
 
 0.672
nsd3
Nuclear receptor binding SET domain protein 3.
     
 0.655
smyd2
Uncharacterized protein.
   
 
 0.637
LOC103461057
SET domain and mariner transposase fusion gene.
     
 0.599
Fam63a
MINDY lysine 48 deubiquitinase 1.
    
 0.594
mindy2
MINDY lysine 48 deubiquitinase 2.
    
 0.594
mmaa
Metabolism of cobalamin associated A.
    
 0.594
SMYD3
SET and MYND domain containing 3.
   
 
 0.583
LOC103462839
SET and MYND domain containing 2a.
   
 
 0.581
ENSPREP00000030719
Uncharacterized protein.
     
 0.571
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.