STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103471901RRM domain-containing protein. (626 aa)    
Predicted Functional Partners:
LOC103473466
Heterogeneous nuclear ribonucleoprotein K, like.
   
 
 0.643
hnrnpk
Heterogeneous nuclear ribonucleoprotein K.
   
 
 0.643
hnrnpm
Heterogeneous nuclear ribonucleoprotein M.
   
 
 0.624
LOC103464518
TAR DNA binding protein.
   
 
 0.598
tardbp
TAR DNA binding protein, like.
   
 
 0.598
sil1
SIL1 nucleotide exchange factor.
    
 
 0.552
ilf2
Interleukin enhancer binding factor 2.
   
 
 0.548
ENSPREP00000032664
Coiled-coil-helix-coiled-coil-helix domain containing 2.
    
 
 0.529
Nono
Non-POU domain containing, octamer-binding.
   
 
 0.523
LOC103480306
RRM domain-containing protein.
   
 
 0.515
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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