STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abca12ATP-binding cassette, sub-family A (ABC1), member 12. (4224 aa)    
Predicted Functional Partners:
bard1
BRCA1 associated RING domain 1.
      
 0.647
abcd4
ATP-binding cassette, sub-family D (ALD), member 4.
      
 0.644
ENSPREP00000003924
ATP-binding cassette, sub-family E (OABP), member 1.
   
  
 0.583
abcc8
ATP-binding cassette, sub-family C (CFTR/MRP), member 8.
   
 0.569
snap29
Synaptosome associated protein 29.
     
 0.568
abcc5
ATP-binding cassette, sub-family C (CFTR/MRP), member 5.
   
 0.566
LOC103476385
NIPA like domain containing 4.
   
  
 0.536
abcf2
ATP-binding cassette, sub-family F (GCN20), member 2b.
      
 0.532
mrc2
Mannose receptor, C type 2.
      
 0.522
ENSPREP00000020159
Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.
   
  
 0.510
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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