STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103467107Von Willebrand factor A domain containing 1. (520 aa)    
Predicted Functional Partners:
LOC103469251
FAM20C golgi associated secretory pathway kinase a.
    
  0.518
LOC103461632
Desmin a; Belongs to the intermediate filament family.
   
 
 0.502
rgma
Repulsive guidance molecule BMP co-receptor a.
      
 0.473
LOC103468371
JunB proto-oncogene, AP-1 transcription factor subunit b.
    
 
 0.433
tep1
Uncharacterized protein.
    
 0.427
LOC103458472
Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.
    
 0.420
ENSPREP00000000234
Family with sequence similarity 20 member C, like.
    
  0.415
LOC103468551
Fam20C domain-containing protein.
    
  0.415
oit3
Oncoprotein induced transcript 3.
    
 0.406
LOC103474833
Transgelin; Belongs to the calponin family.
   
  
 0.400
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.