STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fam151bFamily with sequence similarity 151 member B. (314 aa)    
Predicted Functional Partners:
l1cam
L1 cell adhesion molecule, paralog a.
   
 
 0.700
LOC103463642
Leucine rich repeat and Ig domain containing 3a.
    
 
 0.602
LOC103479447
Ig-like domain-containing protein.
    
 
 0.602
LOC103472835
Triosephosphate isomerase.
      
 0.550
nubp2
Cytosolic Fe-S cluster assembly factor NUBP2; Component of the cytosolic iron-sulfur (Fe/S) protein assembly (CIA) machinery. Required for maturation of extramitochondrial Fe-S proteins. The NUBP1-NUBP2 heterotetramer forms a Fe-S scaffold complex, mediating the de novo assembly of an Fe-S cluster and its transfer to target apoproteins; Belongs to the Mrp/NBP35 ATP-binding proteins family. NUBP2/CFD1 subfamily.
      
 0.549
LOC103473219
Zinc finger, FYVE domain containing 16.
 
    
 0.505
zfyve9
Zinc finger, FYVE domain containing 9a.
 
    
 0.494
ankrd34c
ANK_REP_REGION domain-containing protein.
      
 0.473
ANKRD34A
Ankyrin repeat domain 34A.
      
 0.473
casz1
Castor zinc finger 1.
      
 0.472
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.