STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103463544UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (262 aa)    
Predicted Functional Partners:
ube2r2
Ubiquitin-conjugating enzyme E2R 2; Belongs to the ubiquitin-conjugating enzyme family.
  
  
 
0.905
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
 0.892
rps27a
Ribosomal protein S27a.
   
 0.882
rbx1
Ring-box 1, E3 ubiquitin protein ligase.
   
 0.879
trip12
Thyroid hormone receptor interactor 12.
   
 0.830
uba6
Ubiquitin like modifier activating enzyme 6.
   
 0.782
LOC103464541
Ubiquitin-like modifier activating enzyme 7; Belongs to the ubiquitin-activating E1 family.
   
 0.779
LOC103467931
Ubiquitin-like modifier activating enzyme 1; Belongs to the ubiquitin-activating E1 family.
   
 0.779
cul1
Cullin 1b; Belongs to the cullin family.
   
 0.766
ubb
Uncharacterized protein.
   
 0.764
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.