STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
clstn3Calsyntenin 3. (957 aa)    
Predicted Functional Partners:
cdca3
Si:ch211-69g19.2.
      
 0.681
usp5
Ubiquitin carboxyl-terminal hydrolase.
      
 0.681
LOC103467387
Leucine rich repeat transmembrane neuronal 1.
   
  
 0.658
pex5
Peroxisomal biogenesis factor 5.
 
 
  
 0.649
LOC103472833
Guanine nucleotide binding protein (G protein), beta polypeptide 3b.
      
 0.549
erp27
Uncharacterized protein.
      
 0.549
gnb3
Guanine nucleotide binding protein (G protein), beta polypeptide 3a.
   
  
 0.480
telo2
TEL2, telomere maintenance 2, homolog (S. cerevisiae).
      
 0.477
s100b
S100 calcium binding protein, beta (neural); Belongs to the S-100 family.
   
  
 0.454
p3h3
Prolyl 3-hydroxylase 3.
      
 0.440
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.