STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103457062BTB (POZ) domain containing 6b. (410 aa)    
Predicted Functional Partners:
LOC103467548
Potassium channel tetramerization domain containing 6b.
    
 0.555
LOC103479391
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.537
LOC103474461
Cullin 3; Belongs to the cullin family.
    
 0.537
GAN
Gigaxonin.
     
 0.535
bbs9
Bardet-Biedl syndrome 9.
    
 0.529
rbx1
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.523
mib2
Mindbomb E3 ubiquitin protein ligase 2.
   
 0.518
cand1
Cullin-associated and neddylation-dissociated 1.
     
 0.511
LOC103464819
TIP120 domain-containing protein.
     
 0.511
nae1
NEDD8-activating enzyme E1 regulatory subunit; Regulatory subunit of the dimeric UBA3-NAE1 E1 enzyme. E1 activates NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a NEDD8-UBA3 thioester and free AMP. E1 finally transfers NEDD8 to the catalytic cysteine of UBE2M. Belongs to the ubiquitin-activating E1 family. ULA1 subfamily.
     
 0.507
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.