STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nphs2NPHS2 stomatin family member, podocin. (376 aa)    
Predicted Functional Partners:
nphs1
NPHS1 adhesion molecule, nephrin.
    
 0.685
LOC103466442
Tight junction protein 1b; Belongs to the MAGUK family.
     
 0.637
LOC103462420
Tight junction protein 1a; Belongs to the MAGUK family.
     
 0.637
LOC103461861
BC1 (ubiquinol-cytochrome c reductase) synthesis-like; Belongs to the AAA ATPase family.
   
 0.598
yme1l1
YME1-like 1a; Belongs to the AAA ATPase family.
   
 0.598
afg3l2
AFG3-like AAA ATPase 2.
   
 0.598
LOC103465653
Si:ch1073-174d20.2; Belongs to the AAA ATPase family.
   
 0.598
LOC103478959
YME1-like 1b.
   
 0.598
ENSPREP00000018554
AAA domain-containing protein.
   
 0.598
spg7
SPG7 matrix AAA peptidase subunit, paraplegin.
   
 0.598
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.