STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103462757IRF tryptophan pentad repeat domain-containing protein. (268 aa)    
Predicted Functional Partners:
myd88
Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response.
   
 0.619
stub1
STIP1 homology and U-Box containing protein 1.
    
 
 0.539
ENSPREP00000024840
TIR domain-containing protein.
   
 
 0.525
stat1
Signal transducer and activator of transcription.
   
 0.508
spi1
Spi-1 proto-oncogene b.
   
 
 0.503
LOC103464091
CREB binding protein a.
    
 0.497
crebbp
CREB binding protein b.
    
 0.497
LOC103468460
E1A binding protein p300 b.
    
 0.497
LOC103482005
E1A binding protein p300 a.
    
 0.497
ENSPREP00000017840
Uncharacterized protein.
      
 0.469
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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