STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103457708Notochord granular surface; Belongs to the intermediate filament family. (594 aa)    
Predicted Functional Partners:
banf1
Barrier to autointegration factor 1.
   
 0.560
LOC103477399
Uncharacterized protein.
   
 0.560
LOC103473479
EGF-like domain-containing protein.
      
 0.549
LOC103476912
ST3 beta-galactoside alpha-2,3-sialyltransferase 7; Belongs to the glycosyltransferase 29 family.
   
  
 0.499
sun2
SUN domain-containing protein.
    
 0.480
sun1
Sad1 and UNC84 domain containing 1.
    
 0.480
LOC103461139
RNA binding motif protein 39b.
   
 0.479
lemd3
LEM domain containing 3.
   
 0.479
rbm39
Uncharacterized protein.
   
 0.479
nes
IF rod domain-containing protein; Belongs to the intermediate filament family.
    
 
0.464
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.