STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000018356TatD DNase domain containing 2. (697 aa)    
Predicted Functional Partners:
LOC103465252
Coiled-coil domain containing 174.
 
 
  
 0.744
pdxdc1
Pyridoxal-dependent decarboxylase domain containing 1.
      
 0.554
mtfr1l
Mitochondrial fission regulator 1-like.
      
 0.545
bahd1
Bromo adjacent homology domain containing 1.
   
  
 0.496
LOC103470288
Transcobalamin II.
   
  
 0.486
LOC103458053
Solute carrier family 15 member 1a.
     
 0.477
LOC103478545
Solute carrier family 15 member 2.
     
 0.476
fndc3b
Fibronectin type III domain containing 3Ba.
      
 0.475
p4ha3
Prolyl 4-hydroxylase, alpha polypeptide III.
      
 0.473
mylip
Myosin regulatory light chain interacting protein a.
      
 0.470
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.