STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gtpbp3GTP binding protein 3, mitochondrial. (551 aa)    
Predicted Functional Partners:
mto1
Mitochondrial tRNA translation optimization 1.
 0.972
ENSPREP00000034091
Uncharacterized protein.
 
 0.972
gtpbp8
GTP binding protein 8 (putative).
    
 
 0.955
trmu
tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.
  
 0.954
ergic1
Endoplasmic reticulum-golgi intermediate compartment 1.
  
 0.928
LOC103466072
ERGIC and golgi 2.
  
 0.928
ergic3
ERGIC and golgi 3.
  
 0.928
LOC103459111
Uncharacterized protein.
  
 0.928
mrpl13
Mitochondrial ribosomal protein L13.
   
 
 0.921
Mrpl21
Mitochondrial ribosomal protein L21.
   
 
 0.920
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.