STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103474968Histone deacetylase 12. (345 aa)    
Predicted Functional Partners:
Arid4a
Tudor domain-containing protein.
    
 0.853
arid4b
Translocase of outer mitochondrial membrane 20.
    
 0.853
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.679
ncor2
Nuclear receptor corepressor 2.
    
 0.673
ncor1
Nuclear receptor corepressor 1.
    
 0.673
TADA1
Transcriptional adaptor 1.
    
 0.633
LOC103462700
SIN3 transcription regulator family member Ab.
   
 0.625
sin3a
SIN3 transcription regulator family member Aa.
   
 0.625
sin3b
SIN3 transcription regulator family member B.
   
 0.625
snw1
SNW domain containing 1.
   
 0.621
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.