STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103463292Usher syndrome 1C binding protein 1. (792 aa)    
Predicted Functional Partners:
bms1
BMS1 ribosome biogenesis factor.
   
 0.973
utp18
WD_REPEATS_REGION domain-containing protein.
   
 0.973
utp4
UTP4 small subunit processome component.
   
 0.970
wdr43
WD repeat domain 43.
   
 0.968
utp15
UTP15 small subunit processome component.
   
 0.967
LOC103473717
PWP2 small subunit processome component.
   
 
 0.967
ENSPREP00000008920
Uncharacterized protein.
   
 0.965
nol6
Nucleolar protein 6.
   
 0.964
imp4
IMP U3 small nucleolar ribonucleoprotein 4.
   
 
 0.957
rrp7a
Ribosomal RNA processing 7 homolog A.
   
 0.957
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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