STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103478331-2Si:ch211-151o1.4. (1132 aa)    
Predicted Functional Partners:
mmachc
Metabolism of cobalamin associated C.
      
 0.549
LOC103469015
ABI family, member 3a.
    
 
 0.488
LOC103476706
Coiled-coil serine-rich protein 2a.
  
     0.471
clg21h6orf58
Liver-enriched gene 1, tandem duplicate 1.
      
 0.434
RNF146
Ring finger protein 146.
      
 0.432
LOC103475950
Si:dkey-185m8.2.
  
     0.415
LOC103480748
Zgc:101765.
      
 0.414
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.