STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pbdc1Polysaccharide biosynthesis domain containing 1. (166 aa)    
Predicted Functional Partners:
mysm1
Myb-like, SWIRM and MPN domains 1.
   
 
 0.702
ttll12
Tubulin tyrosine ligase-like family, member 12.
    
   0.666
acot13
Acyl-CoA thioesterase 13.
      
 0.550
pdcd5
Programmed cell death 5.
   
    0.549
bckdhb
Branched chain keto acid dehydrogenase E1 subunit beta.
      
 0.549
zdhhc24
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
      
 0.549
ENSPREP00000022629
Zgc:101851.
   
  
 0.484
irf8
Interferon regulatory factor 8.
      
 0.479
LMOD3
Leiomodin 3.
      
 0.477
gyg1
Glycogenin 1a.
      
 0.473
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.