STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
traf7TNF receptor-associated factor 7. (688 aa)    
Predicted Functional Partners:
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.999
Birc6
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 0.966
zfand4
Zinc finger, AN1-type domain 4.
   
 0.952
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.917
ENSPREP00000007309
Ubiquitin-like domain-containing protein.
   
 0.914
ENSPREP00000007340
Ubiquitin-like domain-containing protein.
   
 0.914
ENSPREP00000007528
Ubiquitin-like domain-containing protein.
   
 0.914
LOC103470505
Ubiquitin like 4A.
   
 0.914
ubb
Uncharacterized protein.
   
 0.914
ENSPREP00000009964
Ubiquitin-like domain-containing protein.
   
 0.914
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.