STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cdk5rap3CDK5 regulatory subunit associated protein 3. (506 aa)    
Predicted Functional Partners:
ufl1
UFM1-specific ligase 1.
   
 
 0.954
ddrgk1
Uncharacterized protein.
    
 
 0.953
fkbp6
Peptidylprolyl isomerase.
    
   0.667
snx11
PX domain-containing protein.
      
 0.646
ttll6
Tubulin tyrosine ligase-like family, member 6.
      
 0.645
UFC1
Ubiquitin-fold modifier conjugating enzyme 1.
   
 
 0.591
ufsp2
Ufm1-specific peptidase 2.
   
  
 0.570
NFE2L1
Nuclear factor, erythroid 2 like 1.
      
 0.553
CBX1
Uncharacterized protein.
      
 0.550
CBX1-2
Chromobox homolog 1b (HP1 beta homolog Drosophila).
      
 0.550
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.