abt1 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

abt1

Activator of basal transcription 1. (274 aa)

Predicted Functional Partners:

rrp36

0.994

utp25

0.987

bysl

0.985

ddx49

0.984

ddx10

0.984

krr1

0.983

esf1

0.982

utp18

0.979

nop14

0.979

utp6

0.973

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
abt1	bysl	ENSPREP00000019324	ENSPREP00000006398	Activator of basal transcription 1.	Bystin-like.	0.985
abt1	ddx10	ENSPREP00000019324	ENSPREP00000028905	Activator of basal transcription 1.	RNA helicase.	0.984
abt1	ddx49	ENSPREP00000019324	ENSPREP00000016576	Activator of basal transcription 1.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 49; Belongs to the DEAD box helicase family.	0.984
abt1	esf1	ENSPREP00000019324	ENSPREP00000006399	Activator of basal transcription 1.	ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae).	0.982
abt1	krr1	ENSPREP00000019324	ENSPREP00000020279	Activator of basal transcription 1.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.983
abt1	nop14	ENSPREP00000019324	ENSPREP00000025074	Activator of basal transcription 1.	NOP14 nucleolar protein homolog (yeast).	0.979
abt1	rrp36	ENSPREP00000019324	ENSPREP00000033623	Activator of basal transcription 1.	Ribosomal RNA processing 36.	0.994
abt1	utp18	ENSPREP00000019324	ENSPREP00000018372	Activator of basal transcription 1.	WD_REPEATS_REGION domain-containing protein.	0.979
abt1	utp25	ENSPREP00000019324	ENSPREP00000007784	Activator of basal transcription 1.	UTP25 small subunit processor component.	0.987
abt1	utp6	ENSPREP00000019324	ENSPREP00000019389	Activator of basal transcription 1.	UTP6 small subunit processome component.	0.973
bysl	abt1	ENSPREP00000006398	ENSPREP00000019324	Bystin-like.	Activator of basal transcription 1.	0.985
bysl	ddx10	ENSPREP00000006398	ENSPREP00000028905	Bystin-like.	RNA helicase.	0.954
bysl	ddx49	ENSPREP00000006398	ENSPREP00000016576	Bystin-like.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 49; Belongs to the DEAD box helicase family.	0.955
bysl	esf1	ENSPREP00000006398	ENSPREP00000006399	Bystin-like.	ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae).	0.926
bysl	krr1	ENSPREP00000006398	ENSPREP00000020279	Bystin-like.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.999
bysl	nop14	ENSPREP00000006398	ENSPREP00000025074	Bystin-like.	NOP14 nucleolar protein homolog (yeast).	0.999
bysl	rrp36	ENSPREP00000006398	ENSPREP00000033623	Bystin-like.	Ribosomal RNA processing 36.	0.970
bysl	utp18	ENSPREP00000006398	ENSPREP00000018372	Bystin-like.	WD_REPEATS_REGION domain-containing protein.	0.998
bysl	utp25	ENSPREP00000006398	ENSPREP00000007784	Bystin-like.	UTP25 small subunit processor component.	0.848
bysl	utp6	ENSPREP00000006398	ENSPREP00000019389	Bystin-like.	UTP6 small subunit processome component.	0.998