STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arih2RBR-type E3 ubiquitin transferase. (500 aa)    
Predicted Functional Partners:
cul5
Cullin 5; Belongs to the cullin family.
    
 
 0.922
CUL5
Cullin 5; Belongs to the cullin family.
    
 
 0.922
rnf7
Ring finger protein 7.
    
 
 0.913
LOC103475981
Ubiquitin-like domain-containing protein.
   
 0.792
LOC103478889
NEDD8 ubiquitin like modifier.
   
 0.792
LOC103473220
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.783
rps27a
Ribosomal protein S27a.
   
 0.712
OTULIN
OTU deubiquitinase with linear linkage specificity.
    
 0.704
tmem183a
Transmembrane protein 183A.
      
 0.681
GABRB3
Gamma-aminobutyric acid type A receptor beta3 subunit; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
      
 0.681
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.