STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103459584Lymphoid-restricted membrane protein. (943 aa)    
Predicted Functional Partners:
LOC103460130
Si:ch211-112g6.4.
      
 0.539
sass6
SAS-6 centriolar assembly protein.
    
 0.497
dhx16
DEAH (Asp-Glu-Ala-His) box polypeptide 16.
    
 
 0.494
nedd1
NEDD1 gamma-tubulin ring complex targeting factor.
      
 0.478
LOC103466132
CD44 molecule (Indian blood group) b.
     
 0.474
chp1
Calcineurin-like EF-hand protein 1.
    
  0.470
Itpr3
MIR domain-containing protein.
    
 0.458
ENSPREP00000007384
Ion_trans domain-containing protein.
    
 0.458
LOC103465353
Inositol 1,4,5-trisphosphate receptor, type 1a.
    
 0.458
itpr2
Inositol 1,4,5-trisphosphate receptor, type 2.
    
 0.458
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.