STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000019532Integrase catalytic domain-containing protein. (386 aa)    
Predicted Functional Partners:
ENSPREP00000032958
Reverse transcriptase domain-containing protein.
 
     0.905
ENSPREP00000007440
Reverse transcriptase domain-containing protein.
 
     0.892
fancm
Uncharacterized protein.
    
 0.763
ENSPREP00000008272
Uncharacterized protein.
 
     0.523
ENSPREP00000009784
Reverse transcriptase domain-containing protein.
 
     0.509
ENSPREP00000004834
CCHC-type domain-containing protein.
 
     0.507
ENSPREP00000028161
Retrotrans_gag domain-containing protein.
 
     0.492
ENSPREP00000000993
CCHC-type domain-containing protein.
 
     0.486
ENSPREP00000002557
CCHC-type domain-containing protein.
 
     0.464
lin52
Lin-52 DREAM MuvB core complex component.
    
 0.443
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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