STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pld6Phospholipase D family, member 6. (211 aa)    
Predicted Functional Partners:
pisd
Phosphatidylserine decarboxylase proenzyme, mitochondrial; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). Plays a central role in phospholipid metabolism and in the interorganelle trafficking of phosphatidylserine.
   
 0.749
psph
Phosphoserine phosphatase.
    
 0.678
asz1
Ankyrin repeat, SAM and basic leucine zipper domain containing 1.
   
  
 0.655
ENSPREP00000022562
Tudor domain containing 9.
   
  
 0.634
parn
Poly(A)-specific ribonuclease (deadenylation nuclease).
      
 0.633
henmt1
HEN methyltransferase 1.
      
 0.625
mov10l1
Uncharacterized protein.
    
 
 0.587
fkbp6
Peptidylprolyl isomerase.
  
  
 0.581
Pld4
Uncharacterized protein.
     
 0.573
rhbdd3
Rhomboid domain containing 3.
   
  
 0.562
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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