STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vsx1Uncharacterized protein. (275 aa)    
Predicted Functional Partners:
ptf1a
Pancreas associated transcription factor 1a.
   
  
 0.642
atoh7
Atonal bHLH transcription factor 7.
   
  
 0.614
LOC103479587
Glutamine synthetase.
      
 0.592
LOC103463995
Glutamine synthetase.
      
 0.592
ENSPREP00000031431
Glutamine synthetase.
      
 0.592
LOC103479226
Carbonic anhydrase; Belongs to the alpha-carbonic anhydrase family.
      
 0.566
lnx2
Ligand of numb-protein X 2a.
      
 0.473
tomm34
Translocase of outer mitochondrial membrane 34.
      
 0.473
isl2
ISL LIM homeobox 2a.
   
  
 0.438
LOC103469637
ISL LIM homeobox 1.
   
  
 0.438
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.