gps2 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

gps2

G protein pathway suppressor 2. (335 aa)

Predicted Functional Partners:

ENSPREP00000004470

0.939

Taf12

0.798

LOC103459886

0.797

tada3

0.790

ncor2

0.784

ncor1

0.784

taf10

0.777

LOC103459281

0.773

LOC103479069

0.773

TBL1XR1

0.773

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000004470	LOC103459281	ENSPREP00000004470	ENSPREP00000001930	Uncharacterized protein.	Transducin beta like 1 X-linked.	0.839
ENSPREP00000004470	LOC103479069	ENSPREP00000004470	ENSPREP00000009479	Uncharacterized protein.	Transducin (beta)-like 1 X-linked receptor 1b.	0.839
ENSPREP00000004470	TBL1XR1	ENSPREP00000004470	ENSPREP00000019466	Uncharacterized protein.	Transducin beta like 1 X-linked receptor 1.	0.839
ENSPREP00000004470	gps2	ENSPREP00000004470	ENSPREP00000019773	Uncharacterized protein.	G protein pathway suppressor 2.	0.939
ENSPREP00000004470	ncor1	ENSPREP00000004470	ENSPREP00000009626	Uncharacterized protein.	Nuclear receptor corepressor 1.	0.954
ENSPREP00000004470	ncor2	ENSPREP00000004470	ENSPREP00000001887	Uncharacterized protein.	Nuclear receptor corepressor 2.	0.954
LOC103459281	ENSPREP00000004470	ENSPREP00000001930	ENSPREP00000004470	Transducin beta like 1 X-linked.	Uncharacterized protein.	0.839
LOC103459281	LOC103459886	ENSPREP00000001930	ENSPREP00000004559	Transducin beta like 1 X-linked.	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.650
LOC103459281	LOC103479069	ENSPREP00000001930	ENSPREP00000009479	Transducin beta like 1 X-linked.	Transducin (beta)-like 1 X-linked receptor 1b.	0.938
LOC103459281	TBL1XR1	ENSPREP00000001930	ENSPREP00000019466	Transducin beta like 1 X-linked.	Transducin beta like 1 X-linked receptor 1.	0.938
LOC103459281	Taf12	ENSPREP00000001930	ENSPREP00000007202	Transducin beta like 1 X-linked.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.650
LOC103459281	gps2	ENSPREP00000001930	ENSPREP00000019773	Transducin beta like 1 X-linked.	G protein pathway suppressor 2.	0.773
LOC103459281	ncor1	ENSPREP00000001930	ENSPREP00000009626	Transducin beta like 1 X-linked.	Nuclear receptor corepressor 1.	0.832
LOC103459281	ncor2	ENSPREP00000001930	ENSPREP00000001887	Transducin beta like 1 X-linked.	Nuclear receptor corepressor 2.	0.832
LOC103459281	tada3	ENSPREP00000001930	ENSPREP00000024856	Transducin beta like 1 X-linked.	Transcriptional adaptor 3 (NGG1 homolog, yeast)-like.	0.463
LOC103459281	taf10	ENSPREP00000001930	ENSPREP00000025580	Transducin beta like 1 X-linked.	TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.645
LOC103459886	LOC103459281	ENSPREP00000004559	ENSPREP00000001930	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Transducin beta like 1 X-linked.	0.650
LOC103459886	LOC103479069	ENSPREP00000004559	ENSPREP00000009479	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Transducin (beta)-like 1 X-linked receptor 1b.	0.650
LOC103459886	TBL1XR1	ENSPREP00000004559	ENSPREP00000019466	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Transducin beta like 1 X-linked receptor 1.	0.650
LOC103459886	Taf12	ENSPREP00000004559	ENSPREP00000007202	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999