bsn protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

bsn

Uncharacterized protein. (4180 aa)

Predicted Functional Partners:

LOC103471241

0.503

LOC103481571

0.503

ctbp1

0.503

LOC103476756

0.503

pclo

0.495

ENSPREP00000020827

0.495

pnn

0.457

pnisr

0.456

atg5

0.456

snap25

0.423

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000020827	bsn	ENSPREP00000020827	ENSPREP00000019784	Uncharacterized protein.	Uncharacterized protein.	0.495
LOC103471241	bsn	ENSPREP00000005967	ENSPREP00000019784	C-terminal binding protein 1; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Uncharacterized protein.	0.503
LOC103476756	bsn	ENSPREP00000017152	ENSPREP00000019784	Uncharacterized protein.	Uncharacterized protein.	0.503
LOC103481571	bsn	ENSPREP00000010094	ENSPREP00000019784	Uncharacterized protein.	Uncharacterized protein.	0.503
atg5	bsn	ENSPREP00000028618	ENSPREP00000019784	Autophagy protein 5; Involved in autophagic vesicle formation.	Uncharacterized protein.	0.456
bsn	ENSPREP00000020827	ENSPREP00000019784	ENSPREP00000020827	Uncharacterized protein.	Uncharacterized protein.	0.495
bsn	LOC103471241	ENSPREP00000019784	ENSPREP00000005967	Uncharacterized protein.	C-terminal binding protein 1; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.503
bsn	LOC103476756	ENSPREP00000019784	ENSPREP00000017152	Uncharacterized protein.	Uncharacterized protein.	0.503
bsn	LOC103481571	ENSPREP00000019784	ENSPREP00000010094	Uncharacterized protein.	Uncharacterized protein.	0.503
bsn	atg5	ENSPREP00000019784	ENSPREP00000028618	Uncharacterized protein.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.456
bsn	ctbp1	ENSPREP00000019784	ENSPREP00000015866	Uncharacterized protein.	C-terminal binding protein 1; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.503
bsn	pclo	ENSPREP00000019784	ENSPREP00000003339	Uncharacterized protein.	Piccolo presynaptic cytomatrix protein a.	0.495
bsn	pnisr	ENSPREP00000019784	ENSPREP00000023319	Uncharacterized protein.	Uncharacterized protein.	0.456
bsn	pnn	ENSPREP00000019784	ENSPREP00000011254	Uncharacterized protein.	Pinin, desmosome associated protein.	0.457
bsn	snap25	ENSPREP00000019784	ENSPREP00000028419	Uncharacterized protein.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.423
ctbp1	bsn	ENSPREP00000015866	ENSPREP00000019784	C-terminal binding protein 1; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Uncharacterized protein.	0.503
pclo	bsn	ENSPREP00000003339	ENSPREP00000019784	Piccolo presynaptic cytomatrix protein a.	Uncharacterized protein.	0.495
pnisr	bsn	ENSPREP00000023319	ENSPREP00000019784	Uncharacterized protein.	Uncharacterized protein.	0.456
pnisr	pnn	ENSPREP00000023319	ENSPREP00000011254	Uncharacterized protein.	Pinin, desmosome associated protein.	0.904
pnn	bsn	ENSPREP00000011254	ENSPREP00000019784	Pinin, desmosome associated protein.	Uncharacterized protein.	0.457