STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103479884Rho/rac guanine nucleotide exchange factor (GEF) 18a. (837 aa)    
Predicted Functional Partners:
LOC103465141
Uncharacterized protein.
   
 0.948
LOC103466989
Uncharacterized protein.
   
 0.948
LOC103467136
Uncharacterized protein.
   
 0.948
LOC103467436
Uncharacterized protein.
   
 0.948
LOC103467398
Uncharacterized protein.
   
 0.948
LOC103478155
Cingulin a.
     
 0.941
LOC103472710
Cingulin b.
     
 0.941
arhgef18
Rho/rac guanine nucleotide exchange factor (GEF) 18b.
  
  
 
0.903
stk11
Serine/threonine kinase 11; Belongs to the protein kinase superfamily.
     
 0.902
epb41l4b
Erythrocyte membrane protein band 4.1 like 4B.
     
 0.902
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.