STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cstf3Cleavage stimulation factor, 3' pre-RNA, subunit 3. (716 aa)    
Predicted Functional Partners:
cstf2
Cleavage stimulation factor, 3' pre-RNA, subunit 2.
   
 0.999
cstf1
Cleavage stimulation factor, 3' pre-RNA, subunit 1.
    
 0.999
Pcf11
CID domain-containing protein.
    
 0.997
ENSPREP00000018529
FIP1 like 1b (S. cerevisiae).
   
 0.997
sympk
Symplekin.
    
 0.996
cpsf1
Cleavage and polyadenylation specific factor 1.
   
 0.986
WDR33
WD repeat domain 33.
   
 0.985
papolg
Poly(A) polymerase gamma.
    
 0.984
mycbpap
Mycbp associated protein.
  
 
 0.982
LOC103472835
Triosephosphate isomerase.
  
 0.982
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.