STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wdr45WD repeat domain 45. (358 aa)    
Predicted Functional Partners:
tecpr2
Tectonin beta-propeller repeat containing 2.
   
  
 0.673
coasy
CoA synthase.
      
 0.671
ATG2B
Autophagy related 2B.
    
 
 0.595
atg2a
Autophagy related 2A.
    
 
 0.586
atg7
ATG7 autophagy related 7 homolog (S. cerevisiae).
    
 
 0.530
atg5
Autophagy protein 5; Involved in autophagic vesicle formation.
      
 0.522
ddx56
DEAD (Asp-Glu-Ala-Asp) box helicase 56.
 
      0.512
becn1
Beclin 1, autophagy related.
    
 
 0.503
atg3
Autophagy-related protein 3.
   
  
 0.482
LOC103468270
WD repeat domain, phosphoinositide interacting 1.
   
0.477
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.