STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zcchc9Zinc finger, CCHC domain containing 9. (263 aa)    
Predicted Functional Partners:
rexo4
REX4 homolog, 3'-5' exonuclease.
   
   0.738
imp3
IMP U3 small nucleolar ribonucleoprotein 3.
   
 
 0.599
mtrex
Mtr4 exosome RNA helicase.
   
 
 0.598
nob1
RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.
   
    0.567
rbm34
RNA binding motif protein 34.
   
 
 0.552
LOC103457348
Serine and arginine rich splicing factor 5b.
   
 
 0.523
ltv1
LTV1 ribosome biogenesis factor.
   
   0.513
bysl
Bystin-like.
   
   0.491
ENSPREP00000008610
RRM domain-containing protein.
   
 
 0.471
tra2b
Transformer 2 beta homolog.
   
 
 0.471
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.