STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103468351Peptidoglycan recognition protein 6. (477 aa)    
Predicted Functional Partners:
akap17a
A kinase (PRKA) anchor protein 17A.
      
 0.550
LOC103471205
Heat shock protein 4b.
   
  
 0.487
LOC103475404
Heat shock protein 4a.
   
  
 0.487
txndc9
Thioredoxin domain containing 9.
     
 0.478
ATP6
ATP synthase subunit a.
      
 0.477
rsad2
Radical S-adenosyl methionine domain containing 2.
      
 0.476
ids
Iduronate 2-sulfatase.
      
 0.475
mrpl30
Mitochondrial ribosomal protein L30.
      
 0.475
unc93a
Unc-93 homolog A.
      
 0.475
ENSPREP00000012632
MIT domain-containing protein.
      
 0.472
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.