STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
npepl1Aminopeptidase like 1. (411 aa)    
Predicted Functional Partners:
stx16
Syntaxin 16; Belongs to the syntaxin family.
 
 
  
 0.585
prpf19
Pre-mRNA processing factor 19.
   
 
 0.569
usp39
Ubiquitin specific peptidase 39.
      
 0.549
clg5h20orf85
Uncharacterized protein.
      
 0.480
LOC103464679
Nuclear receptor coactivator 5.
      
 0.476
mrps33
Mitochondrial ribosomal protein S33.
      
 0.474
rnf145
Ring finger protein 145b.
      
 0.470
LOC103458200
Zmp:0000000662.
      
 0.470
rimkla
Ribosomal modification protein rimK-like family member A.
   
 
 0.458
PLK1
Serine/threonine-protein kinase PLK.
    
 0.455
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.