STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yipf3Yip1 domain family, member 3. (323 aa)    
Predicted Functional Partners:
yipf4
Protein YIPF.
   
 
 0.760
LOC103458072
Yip1 domain-containing protein.
   
 
 0.683
erp44
Endoplasmic reticulum protein 44.
   
  
 0.665
yipf2
Yip1 domain family, member 2.
   
  
 0.658
yipf5
Protein YIPF.
   
 
 0.646
LOC103458978
Zgc:123321.
   
 
 0.646
SMARCE1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1.
      
 0.626
selenos
Selenoprotein S.
   
 
 0.614
rpl13a
Ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.
      
 0.588
ENSPREP00000004325
Golgi apparatus membrane protein TVP23 homolog.
   
 
 0.570
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.