STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103468369BHLH domain-containing protein. (458 aa)    
Predicted Functional Partners:
lmo2
LIM domain only 2 (rhombotin-like 1).
   
 0.733
cbfb
Core-binding factor subunit beta.
     
 0.705
LOC103477443
Runt-related transcription factor.
    
 0.653
LOC103465371
LIM-domain binding 1b.
    
 0.594
ldb1
LIM domain binding 1a.
    
 0.594
LOC103471855
LIM domain binding 2a.
    
 0.581
LOC103463652
Transcription factor 3b.
   
 0.544
TCF4
Transcription factor 4.
   
 0.544
ENSPREP00000026287
Uncharacterized protein.
   
 0.544
tcf12
Transcription factor 12.
   
 0.544
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.