STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
usf1Upstream transcription factor 1. (303 aa)    
Predicted Functional Partners:
ENSPREP00000013476
Upstream transcription factor 2, c-fos interacting.
  
 
0.932
usf2
BHLH domain-containing protein.
  
 
0.929
sp1
Sp1 transcription factor.
    
 0.720
LOC103468460
E1A binding protein p300 b.
    
 0.681
LOC103482005
E1A binding protein p300 a.
    
 0.681
LOC103464091
CREB binding protein a.
    
 0.625
crebbp
CREB binding protein b.
    
 0.625
tyr
Tyrosinase.
    
 0.587
oca2
Oculocutaneous albinism II.
      
 0.570
TYR
Tyrosinase.
    
 0.566
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.