STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TxlnbUncharacterized protein. (99 aa)    
Predicted Functional Partners:
LOC103481737
Syntaxin 4; Belongs to the syntaxin family.
    
 0.502
guca1b
Guanylate cyclase activator 1B.
      
 0.473
dapl1
Death associated protein 1b.
      
 0.473
ldlr
Low density lipoprotein receptor a.
      
 0.473
LOC103463002
Uncharacterized protein.
      
 0.473
LOC103481811
Zgc:123217; Belongs to the peptidase S1 family.
      
 0.473
ITPRID2
ITPR interacting domain containing 2.
      
 0.472
LOC103465129
Linker histone H1M.
      
 0.472
stx1a
t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.
    
 0.454
LOC103469661
Syntaxin 2b; Belongs to the syntaxin family.
    
 0.454
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.