STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103473783Nipped-B protein. (2642 aa)    
Predicted Functional Partners:
smc3
Structural maintenance of chromosomes protein.
   
 0.963
Rbm20
Matrin-type domain-containing protein.
   
 0.904
ENSPREP00000020767
Uncharacterized protein.
 
      0.899
LOC103465732
Structural maintenance of chromosomes protein.
   
 0.894
smc1a
Structural maintenance of chromosomes protein.
   
 0.894
mau2
MAU2 sister chromatid cohesion factor.
    
 0.886
smc5
Structural maintenance of chromosomes 5.
   
 0.849
pds5a
PDS5 cohesin associated factor A.
   
 0.846
pds5b
PDS5 cohesin associated factor B.
   
 0.846
LOC103472890
RAD21 cohesin complex component b.
   
 0.819
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.