STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cmblCarboxymethylenebutenolidase homolog (Pseudomonas). (257 aa)    
Predicted Functional Partners:
adhfe1
Alcohol dehydrogenase iron containing 1.
  
 
 0.930
hadh
Hydroxyacyl-CoA dehydrogenase.
   
 
 0.858
cryl1
Crystallin, lambda 1.
   
 
 0.852
ENSPREP00000001825
RING-CH-type domain-containing protein.
      
 0.693
MARCHF6
Membrane associated ring-CH-type finger 6.
      
 0.693
josd1
Josephin domain containing 1.
      
 0.642
ropn1l
Rhophilin associated tail protein 1-like.
      
 0.631
LOC103478924
FATP synthase c subunit lysine N-methyltransferase.
      
 0.539
josd2
Josephin domain containing 2.
      
 0.522
ephx2
Epoxide hydrolase 2, cytoplasmic.
  
 
 0.500
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.