STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbm28RNA binding motif protein 28. (760 aa)    
Predicted Functional Partners:
nifk
Nucleolar protein interacting with the FHA domain of MKI67.
   
 
 0.991
cebpz
CCAAT enhancer binding protein zeta.
   
 
 0.987
Ddx27
DEAD (Asp-Glu-Ala-Asp) box polypeptide 27; Belongs to the DEAD box helicase family.
   
 0.986
pum3
CPL domain-containing protein.
   
 
 0.983
rrp12
Ribosomal RNA processing 12 homolog.
   
 
 0.983
ddx24
DEAD (Asp-Glu-Ala-Asp) box helicase 24.
   
 0.982
noc2l
NOC2-like nucleolar associated transcriptional repressor.
   
 
 0.982
gtpbp4
Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.
   
 
 0.981
rbm34
RNA binding motif protein 34.
   
 
 0.979
ebna1bp2
EBNA1 binding protein 2.
   
 
 0.976
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (26%) [HD]