STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000021150Fin bud initiation factor a. (206 aa)    
Predicted Functional Partners:
LOC103462261
Plakophilin 3b.
      
 0.636
cd81
Tetraspanin.
      
 0.636
LOC103465759
AMP deaminase; Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family.
      
 0.566
sergef
Secretion regulating guanine nucleotide exchange factor.
      
 0.566
ZFC3H1
Zinc finger C3H1-type containing.
      
 0.566
tbc1d15
TBC1 domain family, member 15.
      
 0.560
ENSPREP00000011352
Uncharacterized protein.
      
 0.553
LOC103465734
Copine VIII.
      
 0.550
CPNE8
Copine 8.
      
 0.550
ush1c
Usher syndrome 1C.
      
 0.529
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.