STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Zpr1ZPR1 zinc finger. (446 aa)    
Predicted Functional Partners:
ENSPREP00000025430
BUD13 homolog.
 
 
  
 0.640
dnajc2
DnaJ (Hsp40) homolog, subfamily C, member 2.
   
  
 0.621
uprt
Uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae).
 
      0.618
shh
Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.
      
 0.615
Six3
SIX homeobox 3a.
      
 0.597
th
Tyrosine hydroxylase.
      
 0.597
polr1a
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
    0.595
noc2l
NOC2-like nucleolar associated transcriptional repressor.
   
    0.595
LOC103472858
Recoverin 3.
   
  
 0.564
rcvrn
Recoverin a.
   
  
 0.564
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.